Root and Stem Problems: Causes & Solutions

Are your plant's roots or stems soft, rotting, or showing signs of stress? Learn how to identify and fix common root and stem issues to save your plant.

Healthy roots and stems are essential for plant growth. If they become weak, mushy, or discolored, the plant may struggle to absorb nutrients and water, leading to decline.

Disclosure: This content includes affiliate links, which means we may earn a commission if you click on a link and make a purchase. As an Amazon Associate, we earn from qualifying purchases. This comes at no extra cost to you and helps offset the cost of running Leafwise. Please read our disclaimer for more info.

Common Causes of Root and Stem Problems

1. Root Rot (Overwatering and Poor Drainage)

Excess moisture can suffocate plant roots, causing them to rot.

  • Symptoms: Mushy, dark roots; foul smell; wilting leaves despite moist soil.
  • How to Diagnose: Gently remove the plant from its pot and inspect the roots—healthy roots should be firm and white.
  • How to Fix It:

2. Stem Rot (Fungal or Bacterial Infections)

Soft, dark, or collapsing stems can indicate a fungal or bacterial infection.

  • Symptoms: Black or brown soft spots on stems; wilting or yellowing leaves.
  • How to Diagnose: Press lightly on the affected area—if it feels mushy, rot is present.
  • How to Fix It:
    • Remove infected portions of the stem with sterilized garden scissors.
    • Apply a fungicide or cinnamon powder to prevent further spread.
    • Improve airflow around the plant to reduce humidity.

3. Root Bound Plants (Outgrown Pot)

Plants that have outgrown their pots can become root-bound, restricting nutrient and water uptake.

  • Symptoms: Roots circling tightly inside the pot; slow growth; frequent wilting.
  • How to Diagnose: If roots are emerging from drainage holes or the soil surface, the plant is likely root-bound.
  • How to Fix It:
    • Repot into a larger container with fresh soil.
    • Gently loosen the roots before placing them in the new pot.

4. Stem Cracking or Splitting

Sudden growth spurts, physical damage, or inconsistent watering can cause stems to crack.

  • Symptoms: Visible splits in the stem; otherwise healthy plant growth.
  • How to Diagnose: Inspect for cracks in the main stem, often near nodes.
  • How to Fix It:
    • Support the plant with stakes or ties.
    • Keep watering consistent to prevent sudden growth surges.

Preventing Root and Stem Issues

  • Water Correctly: Avoid overwatering and ensure proper drainage.
  • Choose the Right Pot: Use containers with drainage holes to prevent root suffocation.
  • Inspect Roots and Stems Regularly: Catch early signs of rot or damage before they spread.
  • Improve Airflow: Ensure good ventilation around the plant to reduce fungal growth.

Need More Help?

If your plant's roots or stems are still struggling, try the Leafwise Plant Health Diagnosis Tool for a personalized assessment.